Re: (Busamouse)
When I transported a friends MH900e, we wrapped it up in a couple old comforters, and used duct-tape (on the comforter) to secure it to various parts of the bike. Once the comforter was snugly secured to the bike, we put a rain-cover on.
When he got the bike, I didnt hear any "Why are there scratches everywhere", or anything like that. The comforter takes the shock of the cover wapping against things, and protects the bike from rocks and other road-based debris. Another idea that I use on my race-trailer, is take a peice of maple-ply, and screw it to the front rails of your trailer, so it sticks up in the air. Re-enforce it with some steel strips, or a couple 2x4's. It drags the wind a bit, but keeps the spray + rocks from the back of your vehicle from blasting the crap out of your bike.