On most of the track/race Ds1000 bikes that I've seen, 45mm is used. I have seen a few 50mm exhausts on bikes with big valves, porting, 1080cc overbore, high compression, nemesis etc. The 50mm systems seem to work well on bikes with the bigger displacement, high compression, and bigger valves with more efficient ports.
We tried putting a larger system on one of the milder bikes (1080 kit and cams only), and it made no more power than the 45, with some rideability lost in the mid range. We also tried a 45 on one of the built bikes (1080kit, big valves, cams, porting) and it did lose a small amount of power at the top of the range. It wasn't a large difference, and only came in to play in the last thousand rpm, but the motor just didn't seem as "happy". I think more than making more power, it allowed the peak to hold on longer into the over-rev which was nice.
I'd say if you have an overbore and cams, a 50mm system isn't really required. Add porting and oversized valves to the equation, and it seems like a good idea.
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1997 748
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