Not an exhaust expert but this winter I'll be building my own undertail exhaust for my track-only 95 900ss/cr.
My buddy, who is helping me and has quite a bit of knowledge on the 900 motors, tells me that the exhaust system is not the limiting factor on these motors but the heads. Having said that, picking reasonable diameter pipe and running reasonable routes I should not impact the bike in a bad way. (ie reduce HP) Not sure if this holds true for yours. Perhaps someone can speak to the head design being the same/different and what the limiting factor is on the newer 900ie.
Now, I'm sure people will jump all over this but that's fine. I'm not going to market this and it's not going on the dyno. It's going to the track and I'm going to ride it in circles....
hope this helps is some way...