I seems like your regulator is at fault. I've went through a couple of electrex regulators before I switched to the oem ducati one. Haven't had anymore charging problems. Also you might want to remove the crappy plastic connector from the stator to the regulator (Mine melted). They cause a lot of resistance and fail when you least expect it taking the stator down with them. Simply remove the connector, splice the wires together and solder. Insulate with some shrink wrap and your done.
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